Resources
Data
RNA-Seq transcriptome profiling of human tracheobronchial epithelial (HTBE) cells in response to infection with Influenza A/California/04/09 (H1N1), A/Wyoming/03/03 (H3N2), and A/Vietnam/1203/04 (H5N1) HALo.
GEO link
RNA-Seq transcriptome profiling of human monocyte-derived macrophages (MDM) in response to infection with Influenza A/California/04/09 (H1N1), A/Wyoming/03/03 (H3N2), and A/Vietnam/1203/04 (H5N1) HALo.
GEO link
RNA-Seq transcriptome profiling of C57BL/6 mouse lungs in response to infection with Influenza A/California/04/09 (H1N1), A/Wyoming/03/03 (H3N2), and A/Vietnam/1203/04 (H5N1) HALo.
GEO link
ChIP-Seq H3K27ac profiling of human tracheobronchial epithelial (HTBE) cells during infection with H1N1, H3N2, and H5N1 influenza virus.
GEO link
Hi-C analysis of the effect of influenza infection on genome structure in human tracheobronchial epithelial cells (HTBE) and monocyte-derived macrophages (MDM).
GEO link
Metabolomics analysis of human tracheobronchial epithelial (HTBE) cells infected with H1N1 influenza virus.
MassIVE link
Metabolomics analysis of C57BL/6 mouse lungs infected with H1N1 influenza virus.
MassIVE link
Metabolomics analysis of C57BL/6 mouse lungs infected with H5N1 (HALo) influenza virus.
MassIVE link
Metascape
A gene annotation and analysis tool. The Metascape web site and tools enable users to apply popular bioinformatics analyses to one or multiple gene/protein lists in order to make effective data-driven gene prioritization decisions. Just with a few mouse clicks, we can start from lists of gene/protein identifiers, extract rich annotations and identify statistically enriched pathways. http://www.metascape.org/
Tools source code
A set of tools for the processing and analysis of proteomics data has been developed by the FluOMICS Proteomics and Modeling Cores and can be accessed via a GitHub repository.
- Cytoscape/Shiny network analytics tool into an open source code repository: Cyto_shiny_code
- Data mining tools used for KEGG Enrichment analysis into an open source code repository: FluOMICS/clustering
- Release of the MIST source code and working AP-MS pipeline into an open source code repository: MIST
- Contribution of the developed features for MSstats to the public MSstats repository: https://github.com/MeenaChoi/MSstats
Reagents
Please contact helpdesk@fluomics.org to request reagents from the FluOMICS program.
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